I've added in the new project wizard an application's source code using the "Server path" tab where I provided the local path to the source code and I checked the "Directory is an exploded Java application archive" checkbox.
If I go to the "Applications" page and click on the application's name link to download it, then I got this page

I feel like for "Server path" application with selected checkbox, the download link should not be added or added to download a zipped version of the input path.
Right now I prefer to remove the link.