The error message below was presented went attempting to run anal analysis within
JBDS version 11.2.0.GA
on Windows 10
using the 4.1.0 off-line distribution dated 04-Jun-2018 21:58
from http://download.jboss.org/jbosstools/photon/snapshots/builds/windup-eclipse-plugin-NIGHTLY/latest/all/

I had previously download and installed the CLI 4.1.0 CLI snapshot with the timestamp of Tue Jun 05 06:44:37.

I have set up my RHAMT_HOME environment variable to point at the CLI 4.1.0 SNAPSHOT
I have ran the CLI successfully against the sample application supplied with the CLI distribution (jee-example-app-1.0.0.ear).

Within JBDS the RHAMT Server starts successfully and it is possible to initiate an analysis, but when I attempt to analyse the same application via the Plugin the message below results:

!MESSAGE An internal error occurred during: "Generating RHAMT Report for Analysis_TEST_02".
!STACK 0
java.lang.NoSuchMethodError: org.jboss.windup.tooling.ExecutionBuilder.setInput(Ljava/util/Set;)V
at org.jboss.tools.windup.core.services.WindupService.generateGraph(WindupService.java:227)
at org.jboss.tools.windup.ui.internal.launch.WindupLaunchDelegate$3.run(WindupLaunchDelegate.java:180)
at org.eclipse.core.internal.jobs.Worker.run(Worker.java:56)