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Type: Bug
Resolution: Obsolete
Priority: Major
Fix Version/s: z-stream
Affects Version/s: quay-v3.6.0
Component/s: quay
Labels:
- quay-enterprise
- triaged

Blocked:
False
Ready:
False
Product:
Quay Enterprise
Market:

RICE Score:
0

SFDC Cases Links:
SFDC Cases Counter:

Description:

This is an issue found when use config editor to configure Quay to use AWS RDS Mysql 8.0(enforced SSL), after Quay Operator reconcile the change, found Quay APP POD was failed to start, the reason is POD startupProbe check was failed, and checked target Mysql database and Quay Upgrade POD logs, found totally 93 tables are created correctly, in Quay APP POD's Database Validation, it's green, see detailed Quay APP POD logs quay_360_app_mysql_pod.logs

Note: Quay image is "quay-operator-bundle-container-v3.6.0-30"

Note: This issue is not existed with Quay 3.5.6.

Quay 3.6.0 new APP POD was failed to start

oc get pod
NAME                                          READY   STATUS              RESTARTS   AGE
quay-operator.v3.6.0-6d8c55c69c-rf4xm         1/1     Running             0          5h15m
quay360-clair-app-85fffbff44-88tvz            1/1     Running             0          73m
quay360-clair-app-85fffbff44-zp7s2            1/1     Running             0          73m
quay360-clair-postgres-6785f8db5d-k2flw       1/1     Running             0          72m
quay360-quay-app-5657496f57-65cf7             0/1     CrashLoopBackOff    17         73m
quay360-quay-app-5657496f57-t2t8b             0/1     Running             18         73m
quay360-quay-app-5fcf45f9bd-bc8s7             1/1     Running             0          5h8m
quay360-quay-app-upgrade-45k9j                0/1     Completed           0          73m
quay360-quay-config-editor-546f7cc75f-g7m5f   1/1     Running             0          73m
quay360-quay-database-5578464b47-8lwn2        0/1     ContainerCreating   0          5h8m
quay360-quay-database-6f564989f9-xcvzk        1/1     Running             0          5h9m
quay360-quay-mirror-8548866666-67rrd          1/1     Running             0          72m
quay360-quay-mirror-8548866666-gt9jx          1/1     Running             0          72m
quay360-quay-postgres-init-9ctdp              1/1     Running             0          5h8m
quay360-quay-redis-9b98c6ff7-995jq            1/1     Running             0          73m

oc get pod quay-operator.v3.6.0-6d8c55c69c-rf4xm -o json | jq '.spec.containers[0].image'
"registry.redhat.io/quay/quay-operator-rhel8@sha256:c31485bc404255f94a5ef10bc83dbc5df971d92a3c499fe20316a34fde12018c"

oc get pod quay360-quay-app-5657496f57-65cf7 -o json | jq '.spec.containers[0].image'
"registry.redhat.io/quay/quay-rhel8@sha256:ed5699b0e42c5c4021b211f15f8f1ea06fb3ccdd3c506cbbc098a48854426931"

Configure Quay 3.6.0 to use AWS Mysql 8.0 with enforced SSL with config editor

Quay 3.6.0 New App POD yaml:

apiVersion: v1
kind: Pod
metadata:
  annotations:
    k8s.v1.cni.cncf.io/network-status: |-
      [{
          "name": "openshift-sdn",
          "interface": "eth0",
          "ips": [
              "10.131.1.180"
          ],
          "default": true,
          "dns": {}
      }]
    k8s.v1.cni.cncf.io/networks-status: |-
      [{
          "name": "openshift-sdn",
          "interface": "eth0",
          "ips": [
              "10.131.1.180"
          ],
          "default": true,
          "dns": {}
      }]
    openshift.io/scc: restricted
    quay-buildmanager-hostname: ""
    quay-managed-fieldgroups: SecurityScanner,Redis,HostSettings,RepoMirror
    quay-operator-service-endpoint: http://quay-operator.quay360:7071
    quay-registry-hostname: quayv360.apps.quay-perf-738.perfscale.devcluster.openshift.com
  creationTimestamp: "2021-09-10T06:58:02Z"
  generateName: quay360-quay-app-5657496f57-
  labels:
    app: quay
    pod-template-hash: 5657496f57
    quay-component: quay-app
    quay-operator/quayregistry: quay360
  managedFields:
  - apiVersion: v1
    fieldsType: FieldsV1
    fieldsV1:
      f:metadata:
        f:annotations:
          .: {}
          f:quay-buildmanager-hostname: {}
          f:quay-managed-fieldgroups: {}
          f:quay-operator-service-endpoint: {}
          f:quay-registry-hostname: {}
        f:generateName: {}
        f:labels:
          .: {}
          f:app: {}
          f:pod-template-hash: {}
          f:quay-component: {}
          f:quay-operator/quayregistry: {}
        f:ownerReferences:
          .: {}
          k:{"uid":"091325ec-c748-4619-a0b4-bcb758f7886c"}:
            .: {}
            f:apiVersion: {}
            f:blockOwnerDeletion: {}
            f:controller: {}
            f:kind: {}
            f:name: {}
            f:uid: {}
      f:spec:
        f:containers:
          k:{"name":"quay-app"}:
            .: {}
            f:args: {}
            f:env:
              .: {}
              k:{"name":"DEBUGLOG"}:
                .: {}
                f:name: {}
                f:value: {}
              k:{"name":"QE_K8S_CONFIG_SECRET"}:
                .: {}
                f:name: {}
                f:value: {}
              k:{"name":"QE_K8S_NAMESPACE"}:
                .: {}
                f:name: {}
                f:valueFrom:
                  .: {}
                  f:fieldRef:
                    .: {}
                    f:apiVersion: {}
                    f:fieldPath: {}
              k:{"name":"WORKER_COUNT_REGISTRY"}:
                .: {}
                f:name: {}
                f:value: {}
              k:{"name":"WORKER_COUNT_SECSCAN"}:
                .: {}
                f:name: {}
                f:value: {}
              k:{"name":"WORKER_COUNT_WEB"}:
                .: {}
                f:name: {}
                f:value: {}
            f:image: {}
            f:imagePullPolicy: {}
            f:name: {}
            f:ports:
              .: {}
              k:{"containerPort":8080,"protocol":"TCP"}:
                .: {}
                f:containerPort: {}
                f:protocol: {}
              k:{"containerPort":8081,"protocol":"TCP"}:
                .: {}
                f:containerPort: {}
                f:protocol: {}
              k:{"containerPort":8443,"protocol":"TCP"}:
                .: {}
                f:containerPort: {}
                f:protocol: {}
              k:{"containerPort":9091,"protocol":"TCP"}:
                .: {}
                f:containerPort: {}
                f:protocol: {}
            f:readinessProbe:
              .: {}
              f:failureThreshold: {}
              f:httpGet:
                .: {}
                f:path: {}
                f:port: {}
                f:scheme: {}
              f:periodSeconds: {}
              f:successThreshold: {}
              f:timeoutSeconds: {}
            f:resources:
              .: {}
              f:limits:
                .: {}
                f:cpu: {}
                f:memory: {}
              f:requests:
                .: {}
                f:cpu: {}
                f:memory: {}
            f:startupProbe:
              .: {}
              f:failureThreshold: {}
              f:httpGet:
                .: {}
                f:path: {}
                f:port: {}
                f:scheme: {}
              f:periodSeconds: {}
              f:successThreshold: {}
              f:timeoutSeconds: {}
            f:terminationMessagePath: {}
            f:terminationMessagePolicy: {}
            f:volumeMounts:
              .: {}
              k:{"mountPath":"/conf/stack"}:
                .: {}
                f:mountPath: {}
                f:name: {}
              k:{"mountPath":"/conf/stack/extra_ca_certs"}:
                .: {}
                f:mountPath: {}
                f:name: {}
                f:readOnly: {}
        f:dnsPolicy: {}
        f:enableServiceLinks: {}
        f:restartPolicy: {}
        f:schedulerName: {}
        f:securityContext:
          .: {}
          f:fsGroup: {}
          f:seLinuxOptions:
            f:level: {}
        f:serviceAccount: {}
        f:serviceAccountName: {}
        f:terminationGracePeriodSeconds: {}
        f:volumes:
          .: {}
          k:{"name":"config"}:
            .: {}
            f:name: {}
            f:secret:
              .: {}
              f:defaultMode: {}
              f:secretName: {}
          k:{"name":"extra-ca-certs"}:
            .: {}
            f:configMap:
              .: {}
              f:defaultMode: {}
              f:name: {}
            f:name: {}
    manager: kube-controller-manager
    operation: Update
    time: "2021-09-10T06:58:02Z"
  - apiVersion: v1
    fieldsType: FieldsV1
    fieldsV1:
      f:status:
        f:conditions:
          k:{"type":"ContainersReady"}:
            .: {}
            f:lastProbeTime: {}
            f:lastTransitionTime: {}
            f:message: {}
            f:reason: {}
            f:status: {}
            f:type: {}
          k:{"type":"Initialized"}:
            .: {}
            f:lastProbeTime: {}
            f:lastTransitionTime: {}
            f:status: {}
            f:type: {}
          k:{"type":"Ready"}:
            .: {}
            f:lastProbeTime: {}
            f:lastTransitionTime: {}
            f:message: {}
            f:reason: {}
            f:status: {}
            f:type: {}
        f:containerStatuses: {}
        f:hostIP: {}
        f:phase: {}
        f:podIP: {}
        f:podIPs:
          .: {}
          k:{"ip":"10.131.1.180"}:
            .: {}
            f:ip: {}
        f:startTime: {}
    manager: kubelet
    operation: Update
    time: "2021-09-10T06:58:05Z"
  - apiVersion: v1
    fieldsType: FieldsV1
    fieldsV1:
      f:metadata:
        f:annotations:
          f:k8s.v1.cni.cncf.io/network-status: {}
          f:k8s.v1.cni.cncf.io/networks-status: {}
    manager: multus
    operation: Update
    time: "2021-09-10T06:58:05Z"
  name: quay360-quay-app-5657496f57-65cf7
  namespace: quay360
  ownerReferences:
  - apiVersion: apps/v1
    blockOwnerDeletion: true
    controller: true
    kind: ReplicaSet
    name: quay360-quay-app-5657496f57
    uid: 091325ec-c748-4619-a0b4-bcb758f7886c
  resourceVersion: "19834611"
  uid: 1094ad7f-064f-4bbf-92a8-ae601c7f7983
spec:
  containers:
  - args:
    - registry-nomigrate
    env:
    - name: QE_K8S_CONFIG_SECRET
      value: quay360-quay-config-secret-cg67d2bf58
    - name: QE_K8S_NAMESPACE
      valueFrom:
        fieldRef:
          apiVersion: v1
          fieldPath: metadata.namespace
    - name: DEBUGLOG
      value: "false"
    - name: WORKER_COUNT_WEB
      value: "4"
    - name: WORKER_COUNT_SECSCAN
      value: "2"
    - name: WORKER_COUNT_REGISTRY
      value: "8"
    image: registry.redhat.io/quay/quay-rhel8@sha256:ed5699b0e42c5c4021b211f15f8f1ea06fb3ccdd3c506cbbc098a48854426931
    imagePullPolicy: IfNotPresent
    name: quay-app
    ports:
    - containerPort: 8443
      protocol: TCP
    - containerPort: 8080
      protocol: TCP
    - containerPort: 8081
      protocol: TCP
    - containerPort: 9091
      protocol: TCP
    readinessProbe:
      failureThreshold: 3
      httpGet:
        path: /health/instance
        port: 8080
        scheme: HTTP
      periodSeconds: 10
      successThreshold: 1
      timeoutSeconds: 1
    resources:
      limits:
        cpu: "2"
        memory: 8Gi
      requests:
        cpu: "2"
        memory: 8Gi
    securityContext:
      capabilities:
        drop:
        - KILL
        - MKNOD
        - SETGID
        - SETUID
      runAsUser: 1000660000
    startupProbe:
      failureThreshold: 10
      httpGet:
        path: /health/instance
        port: 8080
        scheme: HTTP
      periodSeconds: 15
      successThreshold: 1
      timeoutSeconds: 20
    terminationMessagePath: /dev/termination-log
    terminationMessagePolicy: File
    volumeMounts:
    - mountPath: /conf/stack
      name: config
    - mountPath: /conf/stack/extra_ca_certs
      name: extra-ca-certs
      readOnly: true
    - mountPath: /var/run/secrets/kubernetes.io/serviceaccount
      name: kube-api-access-mk2p4
      readOnly: true
  dnsPolicy: ClusterFirst
  enableServiceLinks: true
  imagePullSecrets:
  - name: quay360-quay-app-dockercfg-l75qb
  nodeName: ip-10-0-139-92.us-west-2.compute.internal
  preemptionPolicy: PreemptLowerPriority
  priority: 0
  restartPolicy: Always
  schedulerName: default-scheduler
  securityContext:
    fsGroup: 1000660000
    seLinuxOptions:
      level: s0:c26,c5
  serviceAccount: quay360-quay-app
  serviceAccountName: quay360-quay-app
  terminationGracePeriodSeconds: 30
  tolerations:
  - effect: NoExecute
    key: node.kubernetes.io/not-ready
    operator: Exists
    tolerationSeconds: 300
  - effect: NoExecute
    key: node.kubernetes.io/unreachable
    operator: Exists
    tolerationSeconds: 300
  - effect: NoSchedule
    key: node.kubernetes.io/memory-pressure
    operator: Exists
  volumes:
  - name: config
    secret:
      defaultMode: 420
      secretName: quay360-quay-config-secret-cg67d2bf58
  - configMap:
      defaultMode: 420
      name: quay360-cluster-service-ca
    name: extra-ca-certs
  - name: kube-api-access-mk2p4
    projected:
      defaultMode: 420
      sources:
      - serviceAccountToken:
          expirationSeconds: 3607
          path: token
      - configMap:
          items:
          - key: ca.crt
            path: ca.crt
          name: kube-root-ca.crt
      - downwardAPI:
          items:
          - fieldRef:
              apiVersion: v1
              fieldPath: metadata.namespace
            path: namespace
      - configMap:
          items:
          - key: service-ca.crt
            path: service-ca.crt
          name: openshift-service-ca.crt
status:
  conditions:
  - lastProbeTime: null
    lastTransitionTime: "2021-09-10T06:58:02Z"
    status: "True"
    type: Initialized
  - lastProbeTime: null
    lastTransitionTime: "2021-09-10T06:58:02Z"
    message: 'containers with unready status: [quay-app]'
    reason: ContainersNotReady
    status: "False"
    type: Ready
  - lastProbeTime: null
    lastTransitionTime: "2021-09-10T06:58:02Z"
    message: 'containers with unready status: [quay-app]'
    reason: ContainersNotReady
    status: "False"
    type: ContainersReady
  - lastProbeTime: null
    lastTransitionTime: "2021-09-10T06:58:02Z"
    status: "True"
    type: PodScheduled
  containerStatuses:
  - containerID: cri-o://0562287b2060838753352884f9c610be100c2155f91e65790f6db6d0f79eac82
    image: registry.redhat.io/quay/quay-rhel8@sha256:ed5699b0e42c5c4021b211f15f8f1ea06fb3ccdd3c506cbbc098a48854426931
    imageID: registry.redhat.io/quay/quay-rhel8@sha256:5da615fca43ceeb478626fb9b7ec646a1dd3cd0c626b2769265d31ea04d937f9
    lastState:
      terminated:
        containerID: cri-o://0562287b2060838753352884f9c610be100c2155f91e65790f6db6d0f79eac82
        exitCode: 0
        finishedAt: "2021-09-10T08:58:46Z"
        reason: Completed
        startedAt: "2021-09-10T08:56:13Z"
    name: quay-app
    ready: false
    restartCount: 27
    started: false
    state:
      waiting:
        message: back-off 5m0s restarting failed container=quay-app pod=quay360-quay-app-5657496f57-65cf7_quay360(1094ad7f-064f-4bbf-92a8-ae601c7f7983)
        reason: CrashLoopBackOff
  hostIP: 10.0.139.92
  phase: Running
  podIP: 10.131.1.180
  podIPs:
  - ip: 10.131.1.180
  qosClass: Guaranteed
  startTime: "2021-09-10T06:58:02Z"

Quay APP Upgrade POD logs:

oc logs quay360-quay-app-upgrade-45k9j
   __   __
  /  \ /  \     ______   _    _     __   __   __
 / /\ / /\ \   /  __  \ | |  | |   /  \  \ \ / /
/ /  / /  \ \  | |  | | | |  | |  / /\ \  \   /
\ \  \ \  / /  | |__| | | |__| | / ____ \  | |
 \ \/ \ \/ /   \_  ___/  \____/ /_/    \_\ |_|
  \__/ \__/      \ \__
                  \___\ by Red Hat

Build, Store, and Distribute your Containers
Entering migration mode to version: head
/quay-registry/data/secscan_model/__init__.py:28: DeprecationWarning: Call to deprecated class V2SecurityScanner. (Will be replaced by a V4 API security scanner soon)
  self._legacy_model = V2SecurityScanner(app, instance_keys, storage)
Failed to validate security scanner V2 configuration
/quay-registry/data/secscan_model/__init__.py:30: DeprecationWarning: Call to deprecated class NoopV2SecurityScanner. (Will be replaced by a V4 API security scanner soon)
  self._legacy_model = NoopV2SecurityScanner()
06:58:05 INFO  [alembic.runtime.migration] Context impl MySQLImpl.
06:58:05 INFO  [alembic.runtime.migration] Will assume non-transactional DDL.
06:58:05 INFO  [alembic.runtime.migration] Running upgrade  -> c156deb8845d, Reset our migrations with a required update.
06:58:11 INFO  [alembic.runtime.migration] Running upgrade c156deb8845d -> 6c7014e84a5e, Add user prompt support.
06:58:12 INFO  [alembic.runtime.migration] Running upgrade 6c7014e84a5e -> faf752bd2e0a, Add user metadata fields.
06:58:12 INFO  [alembic.runtime.migration] Running upgrade faf752bd2e0a -> 94836b099894, Create new notification type.
06:58:12 INFO  [alembic.runtime.migration] Running upgrade 94836b099894 -> 45fd8b9869d4, add_notification_type.
06:58:12 INFO  [alembic.runtime.migration] Running upgrade 45fd8b9869d4 -> f5167870dd66, update queue item table indices.
06:58:12 INFO  [alembic.runtime.migration] Running upgrade f5167870dd66 -> fc47c1ec019f, Add state_id field to QueueItem.
06:58:12 INFO  [alembic.runtime.migration] Running upgrade fc47c1ec019f -> 3e8cc74a1e7b, Add severity and media_type to global messages.
06:58:12 INFO  [alembic.runtime.migration] Running upgrade 3e8cc74a1e7b -> d42c175b439a, Backfill state_id and make it unique.
06:58:12 INFO  [alembic.runtime.migration] Running upgrade d42c175b439a -> e2894a3a3c19, Add full text search indexing for repo name and description.
/usr/local/lib/python3.8/site-packages/pymysql/cursors.py:170: Warning: (124, 'InnoDB rebuilding table to add column FTS_DOC_ID')
  result = self._query(query)
06:58:13 INFO  [alembic.runtime.migration] Running upgrade e2894a3a3c19 -> 7a525c68eb13, Add OCI/App models.
06:58:15 INFO  [alembic.runtime.migration] Running upgrade 7a525c68eb13 -> b8ae68ad3e52, Change BlobUpload fields to BigIntegers to allow layers > 8GB.
06:58:15 INFO  [alembic.runtime.migration] Running upgrade b8ae68ad3e52 -> b4df55dea4b3, add repository kind.
06:58:16 INFO  [alembic.runtime.migration] Running upgrade b4df55dea4b3 -> a6c463dfb9fe, back fill build expand_config.
06:58:16 INFO  [alembic.runtime.migration] Running upgrade a6c463dfb9fe -> be8d1c402ce0, Add TeamSync table.
06:58:16 INFO  [alembic.runtime.migration] Running upgrade be8d1c402ce0 -> f30984525c86, Add RepositorySearchScore table.
06:58:16 INFO  [alembic.runtime.migration] Running upgrade f30984525c86 -> c3d4b7ebcdf7, Backfill RepositorySearchScore table.
06:58:16 INFO  [alembic.runtime.migration] Running upgrade c3d4b7ebcdf7 -> ed01e313d3cb, Add trust_enabled to repository.
06:58:17 INFO  [alembic.runtime.migration] Running upgrade ed01e313d3cb -> 53e2ac668296, Remove reference to subdir.
06:58:17 INFO  [alembic.runtime.migration] Running upgrade 53e2ac668296 -> dc4af11a5f90, add notification number of failures column.
06:58:17 INFO  [alembic.runtime.migration] Running upgrade dc4af11a5f90 -> d8989249f8f6, Add change_tag_expiration log type.
06:58:17 INFO  [alembic.runtime.migration] Running upgrade d8989249f8f6 -> 7367229b38d9, Add support for app specific tokens.
06:58:17 INFO  [alembic.runtime.migration] Running upgrade 7367229b38d9 -> cbc8177760d9, Add user location field.
06:58:17 INFO  [alembic.runtime.migration] Running upgrade cbc8177760d9 -> 152bb29a1bb3, Add maximum build queue count setting to user table.
06:58:17 INFO  [alembic.runtime.migration] Running upgrade 152bb29a1bb3 -> c91c564aad34, Drop checksum on ImageStorage.
06:58:17 INFO  [alembic.runtime.migration] Running upgrade c91c564aad34 -> 152edccba18c, Make BlodUpload byte_count not nullable.
06:58:17 INFO  [alembic.runtime.migration] Running upgrade 152edccba18c -> b4c2d45bc132, Add deleted namespace table.
06:58:18 INFO  [alembic.runtime.migration] Running upgrade b4c2d45bc132 -> 61cadbacb9fc, Add ability for build triggers to be disabled.
06:58:18 INFO  [alembic.runtime.migration] Running upgrade 61cadbacb9fc -> 17aff2e1354e, Add automatic disable of build triggers.
06:58:18 INFO  [alembic.runtime.migration] Running upgrade 17aff2e1354e -> 87fbbc224f10, Add disabled datetime to trigger.
06:58:18 INFO  [alembic.runtime.migration] Running upgrade 87fbbc224f10 -> 0cf50323c78b, Add creation date to User table.
06:58:18 INFO  [alembic.runtime.migration] Running upgrade 0cf50323c78b -> b547bc139ad8, Add RobotAccountMetadata table.
06:58:18 INFO  [alembic.runtime.migration] Running upgrade b547bc139ad8 -> 224ce4c72c2f, Add last_accessed field to User table.
06:58:18 INFO  [alembic.runtime.migration] Running upgrade 224ce4c72c2f -> 5b7503aada1b, Cleanup old robots.
06:58:18 INFO  [util.migrate.cleanup_old_robots] Found 0 robots to delete
06:58:18 INFO  [alembic.runtime.migration] Running upgrade 5b7503aada1b -> 1783530bee68, Add LogEntry2 table - QUAY.IO ONLY
06:58:19 INFO  [alembic.runtime.migration] Running upgrade 1783530bee68 -> 5cbbfc95bac7, Remove 'oci' tables not used by CNR. The rest will be migrated and renamed.
06:58:19 INFO  [alembic.runtime.migration] Running upgrade 5cbbfc95bac7 -> 610320e9dacf, Add new Appr-specific tables.
06:58:20 INFO  [alembic.runtime.migration] Running upgrade 610320e9dacf -> 5d463ea1e8a8, Backfill new appr tables.
06:58:20 INFO  [alembic.runtime.migration] Running upgrade 5d463ea1e8a8 -> d17c695859ea, Delete old Appr tables.
06:58:20 INFO  [alembic.runtime.migration] Running upgrade d17c695859ea -> 6c21e2cfb8b6, Change LogEntry to use a BigInteger as its primary key.
06:58:20 INFO  [alembic.runtime.migration] Running upgrade 6c21e2cfb8b6 -> 9093adccc784, Add V2_2 data models for Manifest, ManifestBlob and ManifestLegacyImage.
06:58:22 INFO  [alembic.runtime.migration] Running upgrade 9093adccc784 -> eafdeadcebc7, Remove blob_index from ManifestBlob table.
06:58:22 INFO  [alembic.runtime.migration] Running upgrade eafdeadcebc7 -> 654e6df88b71, Change manifest_bytes to a UTF8 text field.
06:58:22 INFO  [alembic.runtime.migration] Running upgrade 654e6df88b71 -> 13411de1c0ff, Remove unique from TagManifestToManifest.
06:58:22 INFO  [alembic.runtime.migration] Running upgrade 13411de1c0ff -> 10f45ee2310b, Add Tag, TagKind and ManifestChild tables.
06:58:23 INFO  [alembic.runtime.migration] Running upgrade 10f45ee2310b -> 67f0abd172ae, Add TagToRepositoryTag table.
06:58:23 INFO  [alembic.runtime.migration] Running upgrade 67f0abd172ae -> c00a1f15968b
06:58:23 INFO  [alembic.runtime.migration] Running upgrade c00a1f15968b -> 54492a68a3cf, Add NamespaceGeoRestriction table.
06:58:23 INFO  [alembic.runtime.migration] Running upgrade 54492a68a3cf -> 6ec8726c0ace, Add LogEntry3 table.
06:58:23 INFO  [alembic.runtime.migration] Running upgrade 6ec8726c0ace -> e184af42242d, Add missing index on UUID fields.
06:58:23 INFO  [alembic.runtime.migration] Running upgrade e184af42242d -> b9045731c4de, Add lifetime end indexes to tag tables.
06:58:23 INFO  [alembic.runtime.migration] Running upgrade b9045731c4de -> 481623ba00ba, Add index on logs_archived on repositorybuild.
06:58:23 INFO  [alembic.runtime.migration] Running upgrade 481623ba00ba -> b918abdbee43, Run full tag backfill.
06:58:23 INFO  [alembic.runtime.migration] Running upgrade b918abdbee43 -> 5248ddf35167, Repository Mirror.
06:58:25 INFO  [alembic.runtime.migration] Running upgrade 5248ddf35167 -> c13c8052f7a6, Add new fields and tables for encrypted tokens.
06:58:26 INFO  [alembic.runtime.migration] Running upgrade c13c8052f7a6 -> 703298a825c2, Backfill new encrypted fields.
06:58:26 INFO  [703298a825c2_backfill_new_encrypted_fields_py] Backfilling encrypted credentials for access tokens
06:58:26 INFO  [703298a825c2_backfill_new_encrypted_fields_py] Backfilling encrypted credentials for robots
06:58:26 INFO  [703298a825c2_backfill_new_encrypted_fields_py] Backfilling encrypted credentials for repo build triggers
06:58:26 INFO  [703298a825c2_backfill_new_encrypted_fields_py] Backfilling encrypted credentials for app specific auth tokens
06:58:26 INFO  [703298a825c2_backfill_new_encrypted_fields_py] Backfilling credentials for OAuth access tokens
06:58:26 INFO  [703298a825c2_backfill_new_encrypted_fields_py] Backfilling credentials for OAuth auth code
06:58:26 INFO  [703298a825c2_backfill_new_encrypted_fields_py] Backfilling secret for OAuth applications
06:58:26 INFO  [alembic.runtime.migration] Running upgrade 703298a825c2 -> 49e1138ed12d, Change token column types for encrypted columns.
06:58:27 INFO  [alembic.runtime.migration] Running upgrade 49e1138ed12d -> c059b952ed76, Remove unencrypted fields and data.
06:58:28 INFO  [alembic.runtime.migration] Running upgrade c059b952ed76 -> cc6778199cdb, repository mirror notification.
06:58:28 INFO  [alembic.runtime.migration] Running upgrade cc6778199cdb -> 34c8ef052ec9, repo mirror columns.
06:58:28 INFO  [34c8ef052ec9_repo_mirror_columns_py] Migrating to external_reference from existing columns
06:58:28 INFO  [34c8ef052ec9_repo_mirror_columns_py] Reencrypting existing columns
06:58:28 INFO  [alembic.runtime.migration] Running upgrade 34c8ef052ec9 -> 4fd6b8463eb2, Add new DeletedRepository tracking table.
06:58:28 INFO  [alembic.runtime.migration] Running upgrade 4fd6b8463eb2 -> 8e6a363784bb, add manifestsecuritystatus table
06:58:29 INFO  [alembic.runtime.migration] Running upgrade 8e6a363784bb -> 04b9d2191450
06:58:29 INFO  [alembic.runtime.migration] Running upgrade 04b9d2191450 -> 3383aad1e992, Add UploadedBlob table
06:58:29 INFO  [alembic.runtime.migration] Running upgrade 3383aad1e992 -> 88e64904d000, Add new metadata columns to Manifest table
06:58:29 INFO  [alembic.runtime.migration] Running upgrade 88e64904d000 -> 909d725887d3, Add composite index on manifestblob

Config.yaml used by New Quay APP POD:

ALLOW_PULLS_WITHOUT_STRICT_LOGGING: false
ALLOWED_OCI_ARTIFACT_TYPES:
  application/vnd.cncf.helm.config.v1+json:
  - application/tar+gzip
  application/vnd.oci.image.layer.v1.tar+gzip+encrypted:
  - application/vnd.oci.image.layer.v1.tar+gzip+encrypted
AUTHENTICATION_TYPE: Database
AVATAR_KIND: local
BROWSER_API_CALLS_XHR_ONLY: false
BUILDLOGS_REDIS:
  host: quay360-quay-redis
  port: 6379
CREATE_REPOSITORY_ON_PUSH_PUBLIC: true
DATABASE_SECRET_KEY: VO7oiSxeqyja0zSDhEQV1nxV98KJzOshxRUL29y4ihu3iarQwql893PhV4dNa652XpHIE4WpxsFA51G1
DB_CONNECTION_ARGS:
  autorollback: true
  ssl:
    ca: conf/stack/database.pem
  threadlocals: true
DB_URI: mysql+pymysql://quayrdsdb:quayrdsdb@terraform-20210910024029170100000001.c2dhnkrh69gr.us-west-2.rds.amazonaws.com:3306/quay360
DEFAULT_TAG_EXPIRATION: 4w
DISTRIBUTED_STORAGE_CONFIG:
  default:
  - S3Storage
  - host: s3.us-east-2.amazonaws.com
    s3_access_key: AKIAUMQAHCJON275SXFZ
    s3_bucket: quay360
    s3_secret_key: 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
    storage_path: /quay360
DISTRIBUTED_STORAGE_DEFAULT_LOCATIONS:
- default
DISTRIBUTED_STORAGE_PREFERENCE:
- default
ENTERPRISE_LOGO_URL: /static/img/quay-horizontal-color.svg
EXTERNAL_TLS_TERMINATION: true
FEATURE_ACTION_LOG_ROTATION: false
FEATURE_ANONYMOUS_ACCESS: true
FEATURE_APP_SPECIFIC_TOKENS: true
FEATURE_BITBUCKET_BUILD: false
FEATURE_BLACKLISTED_EMAILS: false
FEATURE_BUILD_SUPPORT: false
FEATURE_CHANGE_TAG_EXPIRATION: true
FEATURE_DIRECT_LOGIN: true
FEATURE_EXTENDED_REPOSITORY_NAMES: true
FEATURE_FIPS: false
FEATURE_GENERAL_OCI_SUPPORT: true
FEATURE_GITHUB_BUILD: false
FEATURE_GITHUB_LOGIN: false
FEATURE_GITLAB_BUILD: false
FEATURE_GOOGLE_LOGIN: false
FEATURE_HELM_OCI_SUPPORT: false
FEATURE_INVITE_ONLY_USER_CREATION: false
FEATURE_MAILING: false
FEATURE_NONSUPERUSER_TEAM_SYNCING_SETUP: false
FEATURE_PARTIAL_USER_AUTOCOMPLETE: true
FEATURE_PROXY_STORAGE: false
FEATURE_REPO_MIRROR: true
FEATURE_SECURITY_NOTIFICATIONS: true
FEATURE_SECURITY_SCANNER: true
FEATURE_SIGNING: false
FEATURE_STORAGE_REPLICATION: false
FEATURE_TEAM_SYNCING: false
FEATURE_USER_CREATION: true
FEATURE_USER_INITIALIZE: true
FEATURE_USER_LAST_ACCESSED: true
FEATURE_USER_LOG_ACCESS: false
FEATURE_USER_METADATA: false
FEATURE_USER_RENAME: false
FEATURE_USERNAME_CONFIRMATION: true
FRESH_LOGIN_TIMEOUT: 10m
GITHUB_LOGIN_CONFIG: {}
GITHUB_TRIGGER_CONFIG: {}
GITLAB_TRIGGER_KIND: {}
GPG2_PRIVATE_KEY_FILENAME: signing-private.gpg
GPG2_PUBLIC_KEY_FILENAME: signing-public.gpg
LDAP_ALLOW_INSECURE_FALLBACK: false
LDAP_EMAIL_ATTR: mail
LDAP_UID_ATTR: uid
LDAP_URI: ldap://localhost
LOGS_MODEL: database
LOGS_MODEL_CONFIG: {}
MAIL_DEFAULT_SENDER: support@quay.io
MAIL_PORT: 587
MAIL_USE_AUTH: false
MAIL_USE_TLS: false
PREFERRED_URL_SCHEME: https
REGISTRY_TITLE: Quay
REGISTRY_TITLE_SHORT: Quay
REPO_MIRROR_INTERVAL: 30
REPO_MIRROR_TLS_VERIFY: true
SEARCH_MAX_RESULT_PAGE_COUNT: 10
SEARCH_RESULTS_PER_PAGE: 10
SECRET_KEY: Fhybvqjq-FCghOcU2SO7gNadvuGFsS13ZYlRGHbyFafT3FB219qeg0be471HmsZ0xp48TVdraiE79nFI
SECURITY_SCANNER_INDEXING_INTERVAL: 30
SECURITY_SCANNER_V4_ENDPOINT: http://quay360-clair-app:80
SECURITY_SCANNER_V4_NAMESPACE_WHITELIST:
- admin
SECURITY_SCANNER_V4_PSK: OEgwQWhDSGh5YVd5N2hLQm1DcDE4RTB2TkNOdTZuZk0=
SERVER_HOSTNAME: quayv360.apps.quay-perf-738.perfscale.devcluster.openshift.com
SETUP_COMPLETE: true
SUPER_USERS:
- quay
- admin
TAG_EXPIRATION_OPTIONS:
- 2w
- 4w
- 8w
TEAM_RESYNC_STALE_TIME: 60m
TESTING: false
USER_EVENTS_REDIS:
  host: quay360-quay-redis
  port: 6379
USER_RECOVERY_TOKEN_LIFETIME: 30m

How to create new Mysql 8.0 database:

create database quay360 character set latin1;
create database quay356 character set latin1;

How to enforce SSL for AWS RDS Mysql 8.0:

https://docs.aws.amazon.com/AmazonRDS/latest/UserGuide/CHAP_MySQL.html#MySQL.Concepts.SSLSupport

ALTER USER 'quayrdsdb'@'%' REQUIRE SSL;

Steps:

Deploy Quay with Quay Operator, choose to use unmanaged objectstorage and unmanaged monitoring components
Login Quay config editor, choose to use external Mysql database, input valid Database Server, username, password, database name, and upload the AWS RDS CA SSL Cert(rds-combined-ca-bundle (1).pem )
Click Validate configuration
Click Reconfigure Quay
After Operator Reconcile change, check new Quay APP POD status
Check the logs of Quay Upgrade POD

Expected Results:

New Quay App POD is ready

Actual Results:

New Quay App POD was failed to start.

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image-2021-09-10-16-54-19-118.png
317 kB
2021/09/10 8:54 AM
image-2021-09-10-16-56-21-759.png
366 kB
2021/09/10 8:56 AM
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396 kB
2021/09/10 9:14 AM
quay_360_app_mysql_pod.logs
73 kB
2021/09/10 8:51 AM
rds-combined-ca-bundle (1).pem
43 kB
2021/09/10 8:57 AM

Assignee:: Jonathan King

Reporter:: luffy zhang

Votes:: 0 Vote for this issue

Watchers:: 3 Start watching this issue

Created:: 2021/09/10 8:49 AM

Updated:: 2023/03/16 4:00 PM

Resolved:: 2023/03/16 4:00 PM

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