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Type: Bug
Resolution: Done
Priority: Major
Fix Version/s: quay-v3.4.1
Affects Version/s: quay-v3.4.1
Component/s: quay
Labels:
- quay-enterprise
- triaged

Blocked:
False
Ready:
False
Release Note Text:
Undefined
Git Pull Request:
https://github.com/quay/config-tool/pull/82
Market:

RICE Score:
0

SFDC Cases Links:
SFDC Cases Counter:

Description:

This is an issue found when configure quay to use AWS RDS Mysql DB(only support SSL), after login quay configure editor and provide validate Mysql configuration, including SSL Cert, validation was passed, but after click trigger quay redeployment, Quay new App POD was failed to start, and get following error message.

Reconfigure Quay after validate Mysql database passed:

Running init script '/quay-registry/conf/init/nginx_conf_create.sh'
Running init script '/quay-registry/conf/init/runmigration.sh'
/quay-registry/data/secscan_model/__init__.py:28: DeprecationWarning: Call to deprecated class V2SecurityScanner. (Will be replaced by a V4 API security scanner soon)
  self._legacy_model = V2SecurityScanner(app, instance_keys, storage)
/quay-registry/data/secscan_model/__init__.py:28: DeprecationWarning: Call to deprecated class V2SecurityScanner. (Will be replaced by a V4 API security scanner soon)
  self._legacy_model = V2SecurityScanner(app, instance_keys, storage)
Traceback (most recent call last):
  File "/usr/local/bin/alembic", line 8, in <module>
    sys.exit(main())
  File "/usr/local/lib/python3.8/site-packages/alembic/config.py", line 575, in main
    CommandLine(prog=prog).main(argv=argv)
  File "/usr/local/lib/python3.8/site-packages/alembic/config.py", line 569, in main
    self.run_cmd(cfg, options)
  File "/usr/local/lib/python3.8/site-packages/alembic/config.py", line 546, in run_cmd
    fn(
  File "/usr/local/lib/python3.8/site-packages/alembic/command.py", line 298, in upgrade
    script.run_env()
  File "/usr/local/lib/python3.8/site-packages/alembic/script/base.py", line 489, in run_env
    util.load_python_file(self.dir, "env.py")
  File "/usr/local/lib/python3.8/site-packages/alembic/util/pyfiles.py", line 98, in load_python_file
    module = load_module_py(module_id, path)
  File "/usr/local/lib/python3.8/site-packages/alembic/util/compat.py", line 173, in load_module_py
    spec.loader.exec_module(module)
  File "<frozen importlib._bootstrap_external>", line 783, in exec_module
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "data/migrations/env.py", line 138, in <module>
    run_migrations_online()
  File "data/migrations/env.py", line 105, in run_migrations_online
    connection = engine.connect()
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/engine/base.py", line 2209, in connect
    return self._connection_cls(self, **kwargs)
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/engine/base.py", line 103, in __init__
    else engine.raw_connection()
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/engine/base.py", line 2306, in raw_connection
    return self._wrap_pool_connect(
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/engine/base.py", line 2276, in _wrap_pool_connect
    return fn()
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/pool/base.py", line 303, in unique_connection
    return _ConnectionFairy._checkout(self)
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/pool/base.py", line 773, in _checkout
    fairy = _ConnectionRecord.checkout(pool)
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/pool/base.py", line 492, in checkout
    rec = pool._do_get()
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/pool/impl.py", line 139, in _do_get
    self._dec_overflow()
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/util/langhelpers.py", line 68, in __exit__
    compat.reraise(exc_type, exc_value, exc_tb)
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/util/compat.py", line 153, in reraise
    raise value
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/pool/impl.py", line 136, in _do_get
    return self._create_connection()
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/pool/base.py", line 308, in _create_connection
    return _ConnectionRecord(self)
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/pool/base.py", line 437, in __init__
    self.__connect(first_connect_check=True)
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/pool/base.py", line 652, in __connect
    connection = pool._invoke_creator(self)
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/engine/strategies.py", line 114, in connect
    return dialect.connect(*cargs, **cparams)
  File "/usr/local/lib64/python3.8/site-packages/sqlalchemy/engine/default.py", line 489, in connect
    return self.dbapi.connect(*cargs, **cparams)
  File "/usr/local/lib/python3.8/site-packages/pymysql/__init__.py", line 94, in Connect
    return Connection(*args, **kwargs)
  File "/usr/local/lib/python3.8/site-packages/pymysql/connections.py", line 253, in __init__
    self.ctx = self._create_ssl_ctx(ssl)
  File "/usr/local/lib/python3.8/site-packages/pymysql/connections.py", line 333, in _create_ssl_ctx
    ctx = ssl.create_default_context(cafile=ca, capath=capath)
  File "/usr/lib64/python3.8/ssl.py", line 745, in create_default_context
    context.load_verify_locations(cafile, capath, cadata)
FileNotFoundError: [Errno 2] No such file or directory

Index Image:

Index image v4.7: registry-proxy.engineering.redhat.com/rh-osbs/iib:44939

Quay Image:

oc get pod                                   
NAME                                               READY   STATUS             RESTARTS   AGE
quay-operator.v3.4.1-7544f7664-855r5               1/1     Running            0          67m
quayregistry-clair-app-5cd485c4d4-bcdcz            1/1     Running            0          3m50s
quayregistry-clair-postgres-5d467b778b-prhqd       1/1     Running            0          3m18s
quayregistry-quay-app-55cc7b4758-kgtxf             1/1     Running            2          51m
quayregistry-quay-app-d6495796c-96fqk              0/1     Error              5          3m50s
quayregistry-quay-config-editor-7cd6ccb766-ksc9s   1/1     Running            0          3m50s
quayregistry-quay-database-6f49cf9fc5-49kwx        1/1     Running            0          51m
quayregistry-quay-mirror-974b88dbf-zwh8k           0/1     CrashLoopBackOff   4          3m12s
quayregistry-quay-postgres-init-7kl9j              0/1     Completed          0          51m
quayregistry-quay-postgres-init-9bnz4              0/1     Completed          0          57m
quayregistry-quay-redis-797c5ff666-nk7tj           1/1     Running            0          3m50s

oc get pod quayregistry-quay-app-d6495796c-96fqk -o json | jq '.spec.containers[0].image' 
"registry.redhat.io/quay/quay-rhel8@sha256:bd13bb376f6547fbcb8fa64172dcc4d70d1a5e4cdeb85561784b2824f765abc6"

Steps:

Deploy Quay 3.4.1 with V3.4.1 TNG Operator on AWS using AWS S3 object Storage
Login Quay config editor and choose to edit quay database
Select Mysql and input valid configuration, upload correct SSL Cert of Mysql Server
Click Validations configurations
After validation passed, click reconfigure quay to trigger quay redeployment

Expected Results:

Quay new APP POD is in ready status.

Actual Results:

Quay new APP POD is in ERROR status.