WSDL contains import for 2 XSDs
The paths to both XSD imports are correct containing
schemaLocation=http://127.0.0.1:8080/my-web-service/my-web-service/?wsdl&resource=../../../xsd/misc/my-first-import.xsd

When using the link to my-first-import.xsd the content of it is presented and it contains further import of
schemaLocation="http://127.0.0.1:8080/my-web-service/?wsdl&resource=../../external/xsd/misc/secondary-import.xsd"

This one's path contains only "../../" and the link to it fails if it was "../../../../".

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When an xsd contains an import with a relative URL the URL is relative to the specific schema.
When accessing the WSDL and XSD after deployment to JBossWS all schemaLocations are replaced with an absolute URL: -
http://localhost:8080/my-web-service/?wsdl&resource=../../../xsd/misc/internal-misc.xsd
This URL contains a resource parameter which is the location of the .xsd relative to the wsdl, currently the relative part is being left relative to the xsd and not the wsdl.