when running the wstools.sh script from the $JBOSS_HOME/bin it will fail due to the fact that it is trying to add libraries in the $JBOSS_HOME/client/ that no longer there. Probably due to those files being renamed.

I'ved added the following to my wstools.sh (probably overkill but it works)

WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/jboss-xml-binding.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/activation.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/javassist.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/jbossall-client.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/concurrent.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/jbossws-client.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/jboss-jaxrpc.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/jbossws-core.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/jboss-saaj.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/jboss-j2ee.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/jboss-ejb3x.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/jboss-common-client.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/log4j.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/mail.jar"
WSTOOLS_CLASSPATH="$WSTOOLS_CLASSPATH:$JBOSS_HOME/client/wsdl4j.jar"