hey Chris,
pleae update
dist-diff/src/resources/src-diff.exclude
and remove "thirdparty" from the list.

Then please download the attached patches.build.xml file and update it. Here's a list of all additional files which need to go into this file:

Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/bin/jboss_init_redhat.sh and jboss-eap-4.3/jboss-as/bin/jboss_init_redhat.sh differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/bin/jboss_init_suse.sh and jboss-eap-4.3/jboss-as/bin/jboss_init_suse.sh differ

Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/docs/examples/jms/remoting-sslbisocket-service.xml and jboss-eap-4.3/jboss-as/docs/examples/jms/remoting-sslbisocket-service.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/docs/examples/jms/sybase-persistence-service.xml and jboss-eap-4.3/jboss-as/docs/examples/jms/sybase-persistence-service.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/docs/examples/jms/mssql-persistence-service.xml and jboss-eap-4.3/jboss-as/docs/examples/jms/mssql-persistence-service.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/docs/examples/jms/mysql-persistence-service.xml and jboss-eap-4.3/jboss-as/docs/examples/jms/mysql-persistence-service.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/docs/examples/jms/oracle-persistence-service.xml and jboss-eap-4.3/jboss-as/docs/examples/jms/oracle-persistence-service.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/docs/examples/jms/postgresql-persistence-service.xml and jboss-eap-4.3/jboss-as/docs/examples/jms/postgresql-persistence-service.xml differ

Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/docs/examples/jms/clustered-hsqldb-persistence-service.xml and jboss-eap-4.3/jboss-as/docs/examples/jms/clustered-hsqldb-persistence-service.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/all/deploy/jboss-messaging.sar/clustered-hsqldb-persistence-service.xml and jboss-eap-4.3/jboss-as/server/all/deploy/jboss-messaging.sar/clustered-hsqldb-persistence-service.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/production/deploy/jboss-messaging.sar/clustered-hsqldb-persistence-service.xml and jboss-eap-4.3/jboss-as/server/production/deploy/jboss-messaging.sar/clustered-hsqldb-persistence-service.xml differ

Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/docs/examples/jms/messaging-service.xml and jboss-eap-4.3/jboss-as/docs/examples/jms/messaging-service.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/all/deploy/jboss-messaging.sar/messaging-service.xml and jboss-eap-4.3/jboss-as/server/all/deploy/jboss-messaging.sar/messaging-service.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/default/deploy/jboss-messaging.sar/messaging-service.xml and jboss-eap-4.3/jboss-as/server/default/deploy/jboss-messaging.sar/messaging-service.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/production/deploy/jboss-messaging.sar/messaging-service.xml and jboss-eap-4.3/jboss-as/server/production/deploy/jboss-messaging.sar/messaging-service.xml differ

Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/docs/examples/jms/remoting-bisocket-service.xml and jboss-eap-4.3/jboss-as/docs/examples/jms/remoting-bisocket-service.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/all/deploy/jboss-messaging.sar/remoting-bisocket-service.xml and jboss-eap-4.3/jboss-as/server/all/deploy/jboss-messaging.sar/remoting-bisocket-service.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/default/deploy/jboss-messaging.sar/remoting-bisocket-service.xml and jboss-eap-4.3/jboss-as/server/default/deploy/jboss-messaging.sar/remoting-bisocket-service.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/production/deploy/jboss-messaging.sar/remoting-bisocket-service.xml and jboss-eap-4.3/jboss-as/server/production/deploy/jboss-messaging.sar/remoting-bisocket-service.xml differ

Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/all/conf/jbossjta-properties.xml and jboss-eap-4.3/jboss-as/server/all/conf/jbossjta-properties.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/default/conf/jbossjta-properties.xml and jboss-eap-4.3/jboss-as/server/default/conf/jbossjta-properties.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/production/conf/jbossjta-properties.xml and jboss-eap-4.3/jboss-as/server/production/conf/jbossjta-properties.xml differ

Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/all/deploy/jbossws.sar/jbossws-context.war/WEB-INF/jboss-web.xml and jboss-eap-4.3/jboss-as/server/all/deploy/jbossws.sar/jbossws-context.war/WEB-INF/jboss-web.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/production/deploy/jbossws.sar/jbossws-context.war/WEB-INF/jboss-web.xml and jboss-eap-4.3/jboss-as/server/production/deploy/jbossws.sar/jbossws-context.war/WEB-INF/jboss-web.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/default/deploy/jbossws.sar/jbossws-context.war/WEB-INF/jboss-web.xml and jboss-eap-4.3/jboss-as/server/default/deploy/jbossws.sar/jbossws-context.war/WEB-INF/jboss-web.xml differ

Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/production/deploy/jbossws.sar/jbossws-context.war/WEB-INF/web.xml and jboss-eap-4.3/jboss-as/server/production/deploy/jbossws.sar/jbossws-context.war/WEB-INF/web.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/all/deploy/jbossws.sar/jbossws-context.war/WEB-INF/web.xml and jboss-eap-4.3/jboss-as/server/all/deploy/jbossws.sar/jbossws-context.war/WEB-INF/web.xml differ
Files 4.3.GA_CP01/jboss-eap-4.3/jboss-as/server/default/deploy/jbossws.sar/jbossws-context.war/WEB-INF/web.xml and jboss-eap-4.3/jboss-as/server/default/deploy/jbossws.sar/jbossws-context.war/WEB-INF/web.xml differ