There is no way to delete JNDI Bindings via JMX console. Not having the ability to delete a bindings is a limitation since the only way around it is to delete the entire destination.

There is a method on JMSSErverManager.deleteQueueFromBinding(queueName, jndi_name) and deleteTopicFromBinding(same-signature) but it's not exposed through JMX.

These methods were supposed to be exposed.