ejb-jar.xml:
<ejb-jar xmlns="http://java.sun.com/xml/ns/javaee" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="3.0" xsi:schemaLocation="http://java.sun.com/xml/ns/javaee http://java.sun.com/xml/ns/javaee/ejb-jar_3_0.xsd">
<enterprise-beans>
<message-driven>
<ejb-name>DestBean</ejb-name>
<message-destination-type>javax.jms.Queue</message-destination-type>
<message-destination-link>two_ejb.jar#MsgBeanInQueue</message-destination-link>
<message-destination-ref>
<description>test destination</description>
<message-destination-ref-name>replyQueue</message-destination-ref-name> <message-destination-type>javax.jms.Queue</message-destination-type>
<message-destination-usage>Produces</message-destination-usage>
<message-destination-link>two_ejb.jar#MsgBeanOutQueue</message-destination-link>
</message-destination-ref>

</message-driven>
</enterprise-beans>
</ejb-jar>

with an annotated mdb like:
@MessageDriven(name="DestBean")
public class DestBean
extends DestBeanBase
implements MessageListener
{
@Resource(name="mdc")
private MessageDrivenContext mdc;

public DestBean()

{ super(); }

public EJBContext getEJBContext()

{ return this.mdc; }

}

abstract public class DestBeanBase
{
public static final String test1 = "test1";

abstract public javax.ejb.EJBContext getEJBContext();

@Resource(name="qFactory")
private QueueConnectionFactory qFactory;

@Resource(name="replyQueue")
private Queue replyQueue;

public void onMessage(javax.jms.Message msg)

{...}

}

Is producing a MessageDestinationReferenceMetaData that is missing much of the ejb-jar.xml information:

MessageDestinationReferenceMetaData{
descriptions DescriptionsImpl (id=7741)
id null
ignoreDependency null
injectionTargets Collections$SingletonSet<E> (id=7708)
link null
mappedName null
name "replyQueue"
resolvedJndiName null
type "javax.jms.Queue"
usage null
}

The merge of the annotation metadata with the descriptor metadata is losing information.