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Type: Bug
Resolution: Done
Priority: Critical
Fix Version/s: jboss-fuse-6.2-patches, jboss-fuse-6.3
Affects Version/s: jboss-fuse-6.2
Component/s: None
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Workaround:

Workaround Exists
Workaround Description:

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Manual user intervention to clean up the fabric git repo via shell git cli.

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Manual user intervention to clean up the fabric git repo via shell git cli.
Steps to Reproduce:

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Not yet determined, but profile updates seem to be required.

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Not yet determined, but profile updates seem to be required.

Sprint:
Sprint 5 - towards ER2

SFDC Cases Counter:
SFDC Cases Open:
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During profile update when said update is pushed out and later gets used in rare occasion's the push/pull results in a git conflict. Manually intervening with shell git commands in the fabric git repo on each machine in question allows the end user to clean things up and restore normal operation of the fabric.

The exception is of the form:

io.fabric8.api.FabricException: org.eclipse.jgit.api.errors.CheckoutConflictException: Checkout conflict with files:

Sanitized logging:

2016-03-24 09:47:04,591 | INFO  | Thread-249       | Profiles                         | 76 - io.fabric8.fabric-api - 1.2.0.redhat-133 | refreshProfile: Profile[ver=1.0,id=myProfileID,atts={}]
2016-03-25 09:47:04,592 | INFO  | Thread-249       | ProfileServiceImpl               | 77 - io.fabric8.fabric-core - 1.2.0.redhat-133 | updateProfile: Profile[ver=1.0,id=myProfileID,atts={}]
2016-03-25 09:47:05,498 | INFO  | Thread-249       | DefaultPullPushPolicy            | 79 - io.fabric8.fabric-git - 1.2.0.redhat-133 | Pushing last change to: http://10.1.1.118:8181/git/fabric/
2016-03-25 09:47:05,577 | INFO  | Thread-249       | DefaultPullPushPolicy            | 79 - io.fabric8.fabric-git - 1.2.0.redhat-133 | Push result: [accepted=2,rejected=0,error=null]
2016-03-25 09:47:07,588 | INFO  | pool-68-thread-1 | DefaultPullPushPolicy            | 79 - io.fabric8.fabric-git - 1.2.0.redhat-133 | Performing a pull on remote URL: http://10.1.1.118:8181/git/fabric/
2016-03-25 09:47:07,795 | INFO  | pool-68-thread-1 | DefaultPullPushPolicy            | 79 - io.fabric8.fabric-git - 1.2.0.redhat-133 | Pull result: [localUpdate=false,remoteUpdate=false,versions=[1.0, master],error=null]
2016-03-25 09:50:53,707 | INFO  | 2]-nio2-thread-1 | ClientSessionImpl                | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Client session created
2016-03-25 09:50:53,709 | INFO  | 2]-nio2-thread-1 | ClientSessionImpl                | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Server version string: SSH-2.0-SSHD-CORE-0.12.0.REDHAT-002
2016-03-25 09:50:53,709 | INFO  | 2]-nio2-thread-1 | ClientSessionImpl                | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Kex: server->client aes128-ctr hmac-sha1 none
2016-03-25 09:50:53,709 | INFO  | 2]-nio2-thread-1 | ClientSessionImpl                | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Kex: client->server aes128-ctr hmac-sha1 none
2016-03-25 09:50:54,754 | WARN  | 2]-nio2-thread-3 | AcceptAllServerKeyVerifier       | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Server at fusefab1-oam.iot.mybox.ca/10.202.41.179:8104 presented unverified DSA key: 
2016-03-25 10:00:10,880 | INFO  | Thread-249       | LogoutAction                     | 34 - org.apache.karaf.shell.console - 2.4.0.redhat-620133 | Disconnecting from current session...
2016-03-25 10:00:17,624 | INFO  | a]-nio2-thread-3 | ServerSession                    | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Server session created from /0:0:0:0:0:0:0:1:42819
2016-03-25 10:00:17,643 | INFO  | a]-nio2-thread-2 | ServerSession                    | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Kex: server->client aes128-ctr hmac-sha1 none
2016-03-25 10:00:17,643 | INFO  | a]-nio2-thread-2 | ServerSession                    | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Kex: client->server aes128-ctr hmac-sha1 none
2016-03-25 10:00:17,720 | INFO  | a]-nio2-thread-3 | ServerUserAuthService            | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Session admin@/0:0:0:0:0:0:0:1:42819 authenticated
2016-03-25 10:01:36,958 | INFO  | Thread-266       | ProfileServiceImpl               | 77 - io.fabric8.fabric-core - 1.2.0.redhat-133 | createProfile: Profile[ver=1.0,id=myyProfileID,atts={}]
2016-03-25 10:01:37,842 | INFO  | Thread-266       | DefaultPullPushPolicy            | 79 - io.fabric8.fabric-git - 1.2.0.redhat-133 | Pushing last change to: http://10.1.1.118:8181/git/fabric/
2016-03-25 10:01:37,916 | INFO  | Thread-266       | DefaultPullPushPolicy            | 79 - io.fabric8.fabric-git - 1.2.0.redhat-133 | Push result: [accepted=2,rejected=0,error=null]
2016-03-25 10:01:39,526 | INFO  | pool-68-thread-1 | DefaultPullPushPolicy            | 79 - io.fabric8.fabric-git - 1.2.0.redhat-133 | Performing a pull on remote URL: http://10.1.1.118:8181/git/fabric/
2016-03-25 10:01:39,739 | INFO  | pool-68-thread-1 | DefaultPullPushPolicy            | 79 - io.fabric8.fabric-git - 1.2.0.redhat-133 | Pull result: [localUpdate=false,remoteUpdate=false,versions=[1.0, master],error=null]
2016-03-25 10:03:58,516 | INFO  | 5]-nio2-thread-1 | ClientSessionImpl                | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Client session created
2016-03-25 10:03:58,519 | INFO  | 5]-nio2-thread-1 | ClientSessionImpl                | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Server version string: SSH-2.0-SSHD-CORE-0.12.0.REDHAT-002
2016-03-25 10:03:58,519 | INFO  | 5]-nio2-thread-1 | ClientSessionImpl                | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Kex: server->client aes128-ctr hmac-sha1 none
2016-03-25 10:03:58,519 | INFO  | 5]-nio2-thread-1 | ClientSessionImpl                | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Kex: client->server aes128-ctr hmac-sha1 none
2016-03-25 10:03:59,438 | WARN  | 5]-nio2-thread-3 | AcceptAllServerKeyVerifier       | 58 - org.apache.sshd.core - 0.12.0.redhat-002 | Server at fusefab1-oam.iot.mybox.ca/10.2.1.179:8104 presented unverified DSA key:
2016-03-25 10:11:52,128 | INFO  | Thread-266       | ProfileServiceImpl               | 77 - io.fabric8.fabric-core - 1.2.0.redhat-133 | updateProfile: Profile[ver=1.0,id=myProfileID,atts={}]
2016-03-25 10:11:52,901 | INFO  | Thread-266       | DefaultPullPushPolicy            | 79 - io.fabric8.fabric-git - 1.2.0.redhat-133 | Pushing last change to: http://10.1.1.118:8181/git/fabric/
2016-03-25 10:11:52,986 | INFO  | Thread-266       | DefaultPullPushPolicy            | 79 - io.fabric8.fabric-git - 1.2.0.redhat-133 | Push result: [accepted=2,rejected=0,error=null]
2016-03-25 10:11:54,624 | INFO  | pool-68-thread-1 | DefaultPullPushPolicy            | 79 - io.fabric8.fabric-git - 1.2.0.redhat-133 | Performing a pull on remote URL: http://10.1.1.118:8181/git/fabric/
2016-03-25 10:11:54,813 | INFO  | pool-68-thread-1 | DefaultPullPushPolicy            | 79 - io.fabric8.fabric-git - 1.2.0.redhat-133 | Pull result: [localUpdate=false,remoteUpdate=false,versions=[1.0, master],error=null]
2016-03-25 10:24:13,444 | INFO  | Thread-266       | Profiles                         | 76 - io.fabric8.fabric-api - 1.2.0.redhat-133 | refreshProfile: Profile[ver=1.0,id=myProfileID,atts={}]
2016-03-25 10:24:13,446 | INFO  | Thread-266       | ProfileServiceImpl               | 77 - io.fabric8.fabric-core - 1.2.0.redhat-133 | updateProfile: Profile[ver=1.0,id=myProfileID,atts={}]
2016-03-25 10:24:13,474 | ERROR | Thread-266       | Console                          | 34 - org.apache.karaf.shell.console - 2.4.0.redhat-620133 | Exception caught while executing command
io.fabric8.api.FabricException: org.eclipse.jgit.api.errors.CheckoutConflictException: Checkout conflict with files:
fabric/profiles/fabric/ensemble/0000.profile/io.fabric8.agent.properties
fabric/profiles/fabric/ensemble/0000.profile/io.fabric8.zookeeper.server-0000.properties
fabric/profiles/fabric/ensemble/0000/1.profile/io.fabric8.agent.properties
fabric/profiles/fabric/ensemble/0000/1.profile/io.fabric8.zookeeper.server-0000.properties
fabric/profiles/fabric/ensemble/0001.profile/io.fabric8.agent.properties
fabric/profiles/fabric/ensemble/0001.profile/io.fabric8.zookeeper.server-0001.properties
fabric/profiles/fabric/ensemble/0001/1.profile/io.fabric8.agent.properties
fabric/profiles/fabric/ensemble/0001/1.profile/io.fabric8.zookeeper.server-0001.properties
fabric/profiles/fabric/ensemble/0001/2.profile/io.fabric8.agent.properties
fabric/profiles/fabric/ensemble/0001/2.profile/io.fabric8.zookeeper.server-0001.properties
fabric/profiles/fabric/ensemble/0001/3.profile/io.fabric8.agent.properties
fabric/profiles/fabric/ensemble/0001/3.profile/io.fabric8.zookeeper.server-0001.properties
    at io.fabric8.api.FabricException.launderThrowable(FabricException.java:43)
    at io.fabric8.git.internal.GitDataStoreImpl.executeInternal(GitDataStoreImpl.java:1015)
    at io.fabric8.git.internal.GitDataStoreImpl.updateProfile(GitDataStoreImpl.java:709)
    at io.fabric8.git.internal.GitDataStoreImpl.updateProfile(GitDataStoreImpl.java:687)
    at io.fabric8.internal.ProfileServiceImpl.updateProfile(ProfileServiceImpl.java:152)
    at io.fabric8.internal.ProfileServiceImpl.updateProfile(ProfileServiceImpl.java:145)
    at io.fabric8.api.Profiles.refreshProfile(Profiles.java:438)
    at io.fabric8.commands.ProfileRefreshAction.doExecute(ProfileRefreshAction.java:51)
    at org.apache.karaf.shell.console.AbstractAction.execute(AbstractAction.java:33)
    at org.apache.felix.gogo.commands.basic.AbstractCommand.execute(AbstractCommand.java:35)
    at sun.reflect.GeneratedMethodAccessor124.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)[:1.8.0_71]
    at java.lang.reflect.Method.invoke(Method.java:497)[:1.8.0_71]
    at org.apache.aries.proxy.impl.ProxyHandler$1.invoke(ProxyHandler.java:54)
    at org.apache.aries.proxy.impl.ProxyHandler.invoke(ProxyHandler.java:119)
    at io.fabric8.commands.$ProfileRefresh1210523885.execute(Unknown Source)
    at org.apache.felix.gogo.runtime.CommandProxy.execute(CommandProxy.java:78)[34:org.apache.karaf.shell.console:2.4.0.redhat-620133]
    at org.apache.felix.gogo.runtime.Closure.executeCmd(Closure.java:477)[34:org.apache.karaf.shell.console:2.4.0.redhat-620133]
    at org.apache.felix.gogo.runtime.Closure.executeStatement(Closure.java:403)[34:org.apache.karaf.shell.console:2.4.0.redhat-620133]
    at org.apache.felix.gogo.runtime.Pipe.run(Pipe.java:108)[34:org.apache.karaf.shell.console:2.4.0.redhat-620133]
    at org.apache.felix.gogo.runtime.Closure.execute(Closure.java:183)[34:org.apache.karaf.shell.console:2.4.0.redhat-620133]
    at org.apache.felix.gogo.runtime.Closure.execute(Closure.java:120)[34:org.apache.karaf.shell.console:2.4.0.redhat-620133]
    at org.apache.felix.gogo.runtime.CommandSessionImpl.execute(CommandSessionImpl.java:92)

Note that the typo in profile id's 'myProfileID' vs. 'myyProfileID' reflects an original typo in profile ids pre-sanitization.

is related to

ENTESB-3913 IllegalStateException: Cannot obtain profile write lock in time

Closed

ENTESB-4079 Fix risk of stale info in ZK for Git Master

Closed

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