Modular build not in sync with modules directory structure

     [echo] Static modules: [org.jboss.as.standalone,org.jboss.as.domain-http-error-context,,,   org.jboss.logging,   org.jboss.vfs,   org.slf4j,   org.jboss.logging.jul-to-slf4j-stub]
     [java] Exception in thread "main" java.io.FileNotFoundException: /Users/tdiesler/git/jboss-as/build-modular/../build/src/main/resources/modules/org/jboss/as/logging/main/module.xml (No such file or directory)
     [java] 	at java.io.FileInputStream.open(Native Method)
     [java] 	at java.io.FileInputStream.<init>(FileInputStream.java:138)
     [java] 	at org.jboss.as.config.assembly.ModuleParser.parse(ModuleParser.java:61)
     [java] 	at org.jboss.as.config.assembly.GenerateModulesDefinition.processModuleDependency(GenerateModulesDefinition.java:193)
     [java] 	at org.jboss.as.config.assembly.GenerateModulesDefinition.process(GenerateModulesDefinition.java:130)
     [java] 	at org.jboss.as.config.assembly.GenerateModulesDefinition.main(GenerateModulesDefinition.java:104)
     [java] Java Result: 1